PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.008G108500.1
Common NameB456_008G108500
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ERF
Protein Properties Length: 261aa    MW: 29081.3 Da    PI: 4.8571
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.008G108500.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.21.2e-19132182356
                 AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                         +kGVr+++ +g+++AeIrdp+ ng   r++lg++ t+e+Aa a+++a+ +++g+
  Gorai.008G108500.1 132 FKGVRRRP-WGKYAAEIRDPKRNG--SRIWLGTYETPEDAALAYDRAAFEMRGA 182
                         8*******.**********98776..**************************95 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.102.0E-31131190IPR001471AP2/ERF domain
SMARTSM003802.7E-37131195IPR001471AP2/ERF domain
CDDcd000181.87E-29131191No hitNo description
PROSITE profilePS5103223.235131189IPR001471AP2/ERF domain
PRINTSPR003673.9E-12132143IPR001471AP2/ERF domain
PfamPF008471.5E-13132181IPR001471AP2/ERF domain
SuperFamilySSF541717.19E-23132190IPR016177DNA-binding domain
PRINTSPR003673.9E-12171191IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 261 aa     Download sequence    Send to blast
MEIISESEFN ILESFHHYLF DDFYETPAAA ITCSSDNGVF VDQPCYNRSL SFSGVFLNES  60
WGDLPLKMDD SEDMVVYNAL RDAANSGWTP SNEVTAAEAV EEVVVSGGEE KEGIVNVERE  120
TNAPLRPRGM NFKGVRRRPW GKYAAEIRDP KRNGSRIWLG TYETPEDAAL AYDRAAFEMR  180
GAKAKLNFPH LIGSNTSDPI RVGSRRRSPE PSASTTPYGL RDSSPKPKKR KSASNSEDKA  240
TPEVVQLNTW PTFGDQFWII *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-28128195269ATERF1
3gcc_A1e-28128195269ATERF1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00311DAPTransfer from AT2G44840Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012435678.10.0PREDICTED: ethylene-responsive transcription factor 13-like
SwissprotQ8L9K11e-68ERF99_ARATH; Ethylene-responsive transcription factor 13
TrEMBLA0A0D2RDC40.0A0A0D2RDC4_G
STRINGBra004873.1-P9e-70(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44840.12e-66ethylene-responsive element binding factor 13
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]